Hi @nahvinden,
Welcome to the Auth0 Community!
I understand that you encountered issues populating the permissions claim in the token when logging in with an Organization.
After testing this myself, I was able to reproduce the same observations as you. That is, the permissions array is empty when logging in with an Organization.
I will follow up with our Engineering teams to see if this is a bug.
For now, one workaround is to create a Post-Login action to add the Permissions as a custom claim in the token.
To do so, I recommend using the Management API in Actions to call the Get a User’s Permission endpoint to include the permissions into the Token.
Reference:
I hope this helps!
Please let me know how this goes for you.
Thanks,
Rueben